rs32557668 SNP Detail

Summary

• ID
  rs32557668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32250578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGTTTG AATTTTACGG
  GCAAACTTCC GTGGGTGAGA AACTTAGTTC ACCACTGAGC TAGTGTCTTC GTCAGTAAGC
  GGAAAGTTCA GAGTTGGATT ATGCCACCCA ACTCTGAGTC CCAGTTTACT ATTGGGCTGT
  GAAGACAGTT TAGTTGGATG GCAACTAACT AAATACAGAC AACTGGTCTA CAATAGAAAT
  Y
  CCCGCTGTGT TCACATAGTA AGGATTTATA AAATAGGTTT CAGGTGTGTT TGCAATGATG
  CTATAAAGTT AGCTTCCTAC ATCTTACTAC GTATGCAGTA AACGAGCTAA AGTTTGAAAA
  CTGGGTGTGG TGATACACAA CTAGAATTCA GACACCCAGG AGGCTGAGAC AAGTATTTTC
  AGTTGGGCTT AAAAATTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180364	NES12115644	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32557668					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180364	NES12115644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32250578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	111 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404779	regulatory region 404779	704 bp downstream
Rr514695	regulatory region 514695	1092 bp distal
Rr514696	regulatory region 514696	501 bp distal
Rr514697	regulatory region 514697	1011 bp distal
Rr514698	regulatory region 514698	within coordinates
Tssr137979	transcription start site region 137979	1142 bp downstream
Tssr137980	transcription start site region 137980	782 bp downstream
Tssr137981	transcription start site region 137981	770 bp downstream
Tssr137982	transcription start site region 137982	726 bp downstream
Tssr137983	transcription start site region 137983	706 bp downstream
Tssr137984	transcription start site region 137984	658 bp downstream
Tssr137985	transcription start site region 137985	480 bp downstream
Tssr137986	transcription start site region 137986	452 bp downstream
Tssr140804	transcription start site region 140804	643 bp upstream