rs32557670 SNP Detail

Summary

• ID
  rs32557670
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32250638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTCTTC GTCAGTAAGC
  GGAAAGTTCA GAGTTGGATT ATGCCACCCA ACTCTGAGTC CCAGTTTACT ATTGGGCTGT
  GAAGACAGTT TAGTTGGATG GCAACTAACT AAATACAGAC AACTGGTCTA CAATAGAAAT
  CCCCGCTGTG TTCACATAGT AAGGATTTAT AAAATAGGTT TCAGGTGTGT TTGCAATGAT
  K
  CTATAAAGTT AGCTTCCTAC ATCTTACTAC GTATGCAGTA AACGAGCTAA AGTTTGAAAA
  CTGGGTGTGG TGATACACAA CTAGAATTCA GACACCCAGG AGGCTGAGAC AAGTATTTTC
  AGTTGGGCTT AAAAATTTTG GTGGACTTAA AGTGTTTTGG TTTTGTTTCT TTGCTCTTGC
  TTGTGAGTTT GTTTCTTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180366	NES12115645	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32557670					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180366	NES12115645	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32250638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	171 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404779	regulatory region 404779	764 bp downstream
Rr514695	regulatory region 514695	1152 bp distal
Rr514696	regulatory region 514696	561 bp distal
Rr514697	regulatory region 514697	1071 bp distal
Rr514698	regulatory region 514698	within coordinates
Tssr137979	transcription start site region 137979	1202 bp downstream
Tssr137980	transcription start site region 137980	842 bp downstream
Tssr137981	transcription start site region 137981	830 bp downstream
Tssr137982	transcription start site region 137982	786 bp downstream
Tssr137983	transcription start site region 137983	766 bp downstream
Tssr137984	transcription start site region 137984	718 bp downstream
Tssr137985	transcription start site region 137985	540 bp downstream
Tssr137986	transcription start site region 137986	512 bp downstream
Tssr140804	transcription start site region 140804	703 bp upstream