rs32558484 SNP Detail

Summary

• ID
  rs32558484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32250750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGACAA CTGGTCTACA
  ATAGAAATCC CCGCTGTGTT CACATAGTAA GGATTTATAA AATAGGTTTC AGGTGTGTTT
  GCAATGATGC TATAAAGTTA GCTTCCTACA TCTTACTACG TATGCAGTAA ACGAGCTAAA
  GTTTGAAAAC TGGGTGTGGT GATACACAAC TAGAATTCAG ACACCCAGGA GGCTGAGACA
  R
  GTATTTTCAG TTGGGCTTAA AAATTTTGGT GGACTTAAAG TGTTTTGGTT TTGTTTCTTT
  GCTCTTGCTT GTGAGTTTGT TTCTTCAAGT CAAGGTGTCT CTATGTAGCC CTGGTTGTCC
  TGGAACTCCC TCTGTAGACC GGGCTGGCCT TGAACTCAGA GATCTGCCTA TTTCTGCCTC
  ACCAGTGCTG GCTCTGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180370	NES12115648	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32558484					SNP	A	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180370	NES12115648	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32250750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	283 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404779	regulatory region 404779	876 bp downstream
Rr514695	regulatory region 514695	1264 bp distal
Rr514696	regulatory region 514696	673 bp distal
Rr514697	regulatory region 514697	1183 bp distal
Rr514698	regulatory region 514698	70 bp distal
Tssr137979	transcription start site region 137979	1314 bp downstream
Tssr137980	transcription start site region 137980	954 bp downstream
Tssr137981	transcription start site region 137981	942 bp downstream
Tssr137982	transcription start site region 137982	898 bp downstream
Tssr137983	transcription start site region 137983	878 bp downstream
Tssr137984	transcription start site region 137984	830 bp downstream
Tssr137985	transcription start site region 137985	652 bp downstream
Tssr137986	transcription start site region 137986	624 bp downstream
Tssr140804	transcription start site region 140804	815 bp upstream