rs32558485 SNP Detail

Summary

• ID
  rs32558485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32252017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAAT GAATGAGAAT GAATATCTCA
  AAACAAAACA ATGGTAACAG GAATTTGAAA GCTAGCTGTG GTTGTATATA TCCTATCATT
  TGAGAAGTTG AGGCTGGAGG ATGGTGAATC CTAGGTTAGC CTGGGCTGTT TTAACTTCAC
  Y
  ACAGTGTATT AATCTGGTTA CCTACCTAAT AGCCACCCTT CTCACTGTAC ACTTTACAAT
  AGGGAATGAA GAGTCAGAAA GGTTCTTAAG TGGAAATTGC TGAGGGTTTG GAGGACTATT
  CTGGCCTGAC CAGTTACACC TTTAGGACTA ATGCTTATGT ACTTGACACA TATTTTACAC
  AACCAGAAGG AACTAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180372	NES12115554	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32558485					SNP	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180372	NES12115554	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32252017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	1550 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404780	regulatory region 404780	1191 bp upstream
Rr514696	regulatory region 514696	1940 bp distal
Rr514698	regulatory region 514698	1337 bp distal
Rr514699	regulatory region 514699	838 bp proximal
Tssr137985	transcription start site region 137985	1919 bp downstream
Tssr137986	transcription start site region 137986	1891 bp downstream