rs32558486 SNP Detail

Summary

• ID
  rs32558486
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32252051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAT CTGGTTACCT ACCTAATAGC
  S
  ACCCTTCTCA CTGTACACTT TACAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48180374	NES12115555	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	G	C	G	C	C		C	C	C	C		C
ss147948428	ENSMUSSNP6161859	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss325136473	CHEV_16_32433319	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32558486					SNP	C	G	C	C	C	G	C	G	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180374	NES12115555	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32252051 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	1584 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404780	regulatory region 404780	1157 bp upstream
Rr514696	regulatory region 514696	1974 bp distal
Rr514698	regulatory region 514698	1371 bp distal
Rr514699	regulatory region 514699	804 bp proximal
Tssr137985	transcription start site region 137985	1953 bp downstream
Tssr137986	transcription start site region 137986	1925 bp downstream