rs32558490 SNP Detail

Summary

• ID
  rs32558490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32252234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACCTACC TAATAGCCAC
  CCTTCTCACT GTACACTTTA CAATAGGGAA TGAAGAGTCA GAAAGGTTCT TAAGTGGAAA
  TTGCTGAGGG TTTGGAGGAC TATTCTGGCC TGACCAGTTA CACCTTTAGG ACTAATGCTT
  ATGTACTTGA CACATATTTT ACACAACCAG AAGGAACTAG AAGAGAACCT GCTTCAACTT
  Y
  ACTTCTCTAG GGAATTGGCT AGTTTTTCGC TTGTGCTTGT TTGTTTTTGT TTTTAATTTG
  GGGTTTAAAC CAAGGCTGAT TTGCCGATTT CTTTCAAAGC AAGCTAGCAA AATGGCTGGG
  TATGATGGTA CAGGCTTGTA CGTTCAGCAG CTGGGTGGTA AAGGCATGAG GATCACAAGT
  TCACGGCCAT CCTTGAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180378	NES12115557	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32558490					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180378	NES12115557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32252234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	1767 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404780	regulatory region 404780	974 bp upstream
Rr514698	regulatory region 514698	1554 bp distal
Rr514699	regulatory region 514699	621 bp proximal