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rs32558492 SNP Detail
Summary
  • ID
    rs32558492
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr16:32252329 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGACTATTC TGGCCTGACC
    AGTTACACCT TTAGGACTAA TGCTTATGTA CTTGACACAT ATTTTACACA ACCAGAAGGA
    ACTAGAAGAG AACCTGCTTC AACTTCACTT CTCTAGGGAA TTGGCTAGTT TTTCGCTTGT
    GCTTGTTTGT TTTTGTTTTT AATTTGGGGT TTAAACCAAG GCTGATTTGC CGATTTCTTT
    S
    AAAGCAAGCT AGCAAAATGG CTGGGTATGA TGGTACAGGC TTGTACGTTC AGCAGCTGGG
    TGGTAAAGGC ATGAGGATCA CAAGTTCACG GCCATCCTTG AACTCTTTCC TTGGCTGCAT
    AGAGAGTTTG AGGCCAGCCT CAGTGAGAAC CAGTATGGTG ACTTTATTGA GAGAGAATGA
    GCTTATGATT TCTCCTTGTA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss48180380 NES12115558 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C G C G C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs32558492 SNP C C C C C C C C C G C G C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48180380 NES12115558 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:32252329 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi8190 CpG island 8190 1862 bp distal
Pcyt1a phosphate cytidylyltransferase 1, choline, alpha isoform Intron
Rr404780 regulatory region 404780 879 bp upstream
Rr514698 regulatory region 514698 1649 bp distal
Rr514699 regulatory region 514699 526 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory