AGGACTATTC TGGCCTGACC AGTTACACCT TTAGGACTAA TGCTTATGTA CTTGACACAT ATTTTACACA ACCAGAAGGA ACTAGAAGAG AACCTGCTTC AACTTCACTT CTCTAGGGAA TTGGCTAGTT TTTCGCTTGT GCTTGTTTGT TTTTGTTTTT AATTTGGGGT TTAAACCAAG GCTGATTTGC CGATTTCTTT S AAAGCAAGCT AGCAAAATGG CTGGGTATGA TGGTACAGGC TTGTACGTTC AGCAGCTGGG TGGTAAAGGC ATGAGGATCA CAAGTTCACG GCCATCCTTG AACTCTTTCC TTGGCTGCAT AGAGAGTTTG AGGCCAGCCT CAGTGAGAAC CAGTATGGTG ACTTTATTGA GAGAGAATGA GCTTATGATT TCTCCTTGTA S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48180380 | NES12115558 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | G | C | G | C |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs32558492 | SNP | C | C | C | C | C | C | C | C | C | G | C | G | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48180380 | NES12115558 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr16:32252329 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi8190 | CpG island 8190 | 1862 bp distal | ||||||
Pcyt1a | phosphate cytidylyltransferase 1, choline, alpha isoform | Intron | ||||||
Rr404780 | regulatory region 404780 | 879 bp upstream | ||||||
Rr514698 | regulatory region 514698 | 1649 bp distal | ||||||
Rr514699 | regulatory region 514699 | 526 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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