rs32559831 SNP Detail

Summary

• ID
  rs32559831
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC CCCTGAAATG TCTAAAATAC
  W
  GTCATGAAAA CCTGTAGTCT CTATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45163214	mCV23137244	ABI	CRAMUS_MOUSE	f	SNP		T					A		T
ss49513620	NES12839731	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	T		A	T	A	T		A	A	A	A		A
ss145704582	ENSMUSSNP3162600	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320045522	CHEV_1_151948631	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32559831					SNP	A	T	A	A	A	T	A	A	T	A	T	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513620	NES12839731	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1180 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	1627 bp upstream
Tssr242	transcription start site region 242	1299 bp upstream
Tssr9221	transcription start site region 9221	1744 bp downstream
Tssr9222	transcription start site region 9222	1395 bp downstream
Tssr9223	transcription start site region 9223	552 bp downstream
Tssr9224	transcription start site region 9224	444 bp downstream
Tssr9225	transcription start site region 9225	319 bp downstream
Tssr9226	transcription start site region 9226	306 bp downstream
Tssr9227	transcription start site region 9227	228 bp downstream
Tssr9228	transcription start site region 9228	188 bp downstream
Tssr9229	transcription start site region 9229	175 bp downstream
Tssr9230	transcription start site region 9230	476 bp upstream
Tssr9231	transcription start site region 9231	628 bp upstream
Tssr9232	transcription start site region 9232	668 bp upstream
Tssr9233	transcription start site region 9233	1141 bp upstream
Tssr9234	transcription start site region 9234	1145 bp upstream
Tssr9235	transcription start site region 9235	1185 bp upstream
Tssr9236	transcription start site region 9236	1222 bp upstream
Tssr9237	transcription start site region 9237	1241 bp upstream
Tssr9238	transcription start site region 9238	1270 bp upstream
Tssr9239	transcription start site region 9239	1311 bp upstream
Tssr9240	transcription start site region 9240	1333 bp upstream
Tssr9241	transcription start site region 9241	1359 bp upstream
Tssr9242	transcription start site region 9242	1379 bp upstream
Tssr9243	transcription start site region 9243	1503 bp upstream
Tssr9244	transcription start site region 9244	1548 bp upstream
Tssr9245	transcription start site region 9245	1568 bp upstream
Tssr9246	transcription start site region 9246	1605 bp upstream
Tssr9247	transcription start site region 9247	1744 bp upstream
Tssr14127	transcription start site region 14127	1946 bp upstream
Tssr14128	transcription start site region 14128	1891 bp upstream
Tssr14129	transcription start site region 14129	1816 bp upstream
Tssr14130	transcription start site region 14130	239 bp upstream
Tssr14131	transcription start site region 14131	183 bp upstream