rs32560555 SNP Detail

Summary

• ID
  rs32560555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11322233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGG GCCCGGCCGG AGCGTTTCGC
  Y
  AGAGCGCCTC AGCCATGCCC ACGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45663987	mCV23467945	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146013130	ENSMUSSNP1776728	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321043192	CHEV_4_11249380	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32560555					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11322233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14033	CpG island 14033	within coordinates
Dpy19l4	dpy-19 like 4	96 bp upstream
Gm26663	predicted gene, 26663	within coordinates
Rr588912	regulatory region 588912	258 bp distal
Rr588913	regulatory region 588913	within coordinates
Rr588914	regulatory region 588914	74 bp distal
Rr588915	regulatory region 588915	24 bp proximal
Tssr36477	transcription start site region 36477	320 bp downstream
Tssr36478	transcription start site region 36478	296 bp downstream
Tssr36479	transcription start site region 36479	within coordinates
Tssr40926	transcription start site region 40926	144 bp upstream
Tssr40927	transcription start site region 40927	87 bp upstream