rs32565253 SNP Detail

Summary

• ID
  rs32565253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32696526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGTTTT GAGACAGCCT
  CACTGTGGAG CTCTGGCTGG TCTGGAGCTC TGAGATCTGC CTGCCTCTCA GTACTAAGTC
  CAAAGGTGCC TGGCCTCATC CACACTCTTC TTTACAATCT AGCTTCCCCA GTTGCTAGCA
  GTTCAAGGGG TTGGGGTTGG AGAGTAAAAT AGCAAACCCA AGGACCTTGT GGCAAAAGCA
  Y
  CAGCTATTCT ACTATTCTAC GTGCCAGATT TTACTGTTGA ATCTTGCTGA ATTCAAACTT
  TTTACCATTA GTTTCTTGTA TGCCCTCATA GGTGTGTGCT ATGTTAACTG ACTATATACA
  GTTACAGTTT TGCCATGGGA AAGAAAACCA ACTTGACTTT TGCTGTTGTT TTGAGACAGG
  TAATCTTTAC ATAGCCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss48181858	NES12108574	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs32565253					SNP	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181858	NES12108574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32696526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	1190 bp proximal
Fyttd1	forty-two-three domain containing 1	1344 bp upstream
Rr404782	regulatory region 404782	1659 bp upstream
Rr514841	regulatory region 514841	635 bp distal
Rr514842	regulatory region 514842	17 bp distal
Rr514843	regulatory region 514843	803 bp proximal
Rr514844	regulatory region 514844	1600 bp proximal
Rr514845	regulatory region 514845	1985 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	1619 bp upstream
Tssr138061	transcription start site region 138061	1677 bp upstream
Tssr138062	transcription start site region 138062	1729 bp upstream
Tssr138063	transcription start site region 138063	1929 bp upstream
Tssr138064	transcription start site region 138064	1945 bp upstream
Tssr140832	transcription start site region 140832	1453 bp downstream
Tssr140833	transcription start site region 140833	1481 bp downstream
Tssr140834	transcription start site region 140834	1531 bp downstream
Tssr140835	transcription start site region 140835	1567 bp downstream