rs32566160 SNP Detail

Summary

• ID
  rs32566160
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32697294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAAATA TGTTATTAAT
  AGATGCAATT GTACATGATA TGAAGTGTTT TAAAGTATGG AAGCTCCAAG CAAAAAATAG
  TAAAATGTGT CACGGCTGTT GAATTTGCAA ATCACATGGA TTGTGACATT ACTAAATTAA
  ATATAGGATA GTGTGGTTTT CAGATTTCTT GGGTCACTAC AAAGCTAGCT CAGGTCTCTA
  S
  TAAAGAAATT TTAGGAAGTG AAGAAAACGG TGGCAGAGAT TTCTACACGA ACAGAACACT
  TGACGCTGTT TTTTTTTCCT TAGATGAAAA TGCCTGAGAT GGTTTTGAGC TGTTATGTGG
  GGGATGGAAT AACAGGCATG CTTCCACGCA GGTGCGTTGT AGAAAATAAA GTAAAAAAAA
  AAGGGGGGGG GGGAATAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
ss48181866	NES12108538	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
rs32566160					SNP	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181866	NES12108538	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32697294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	422 bp proximal
Fyttd1	forty-two-three domain containing 1	576 bp upstream
Rr404782	regulatory region 404782	891 bp upstream
Rr514841	regulatory region 514841	1403 bp distal
Rr514842	regulatory region 514842	785 bp distal
Rr514843	regulatory region 514843	35 bp proximal
Rr514844	regulatory region 514844	832 bp proximal
Rr514845	regulatory region 514845	1217 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	851 bp upstream
Tssr138061	transcription start site region 138061	909 bp upstream
Tssr138062	transcription start site region 138062	961 bp upstream
Tssr138063	transcription start site region 138063	1161 bp upstream
Tssr138064	transcription start site region 138064	1177 bp upstream
Tssr140832	transcription start site region 140832	685 bp downstream
Tssr140833	transcription start site region 140833	713 bp downstream
Tssr140834	transcription start site region 140834	763 bp downstream
Tssr140835	transcription start site region 140835	799 bp downstream