rs32566162 SNP Detail

Summary

• ID
  rs32566162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32697322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTACATGA TATGAAGTGT
  TTTAAAGTAT GGAAGCTCCA AGCAAAAAAT AGTAAAATGT GTCACGGCTG TTGAATTTGC
  AAATCACATG GATTGTGACA TTACTAAATT AAATATAGGA TAGTGTGGTT TTCAGATTTC
  TTGGGTCACT ACAAAGCTAG CTCAGGTCTC TACTAAAGAA ATTTTAGGAA GTGAAGAAAA
  Y
  GGTGGCAGAG ATTTCTACAC GAACAGAACA CTTGACGCTG TTTTTTTTTC CTTAGATGAA
  AATGCCTGAG ATGGTTTTGA GCTGTTATGT GGGGGATGGA ATAACAGGCA TGCTTCCACG
  CAGGTGCGTT GTAGAAAATA AAGTAAAAAA AAAAGGGGGG GGGGGAATAA CATTTCGTAA
  AGGGGAAACG AATTATTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss48181868	NES12108544	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs32566162					SNP	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181868	NES12108544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32697322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	394 bp proximal
Fyttd1	forty-two-three domain containing 1	548 bp upstream
Rr404782	regulatory region 404782	863 bp upstream
Rr514841	regulatory region 514841	1431 bp distal
Rr514842	regulatory region 514842	813 bp distal
Rr514843	regulatory region 514843	7 bp proximal
Rr514844	regulatory region 514844	804 bp proximal
Rr514845	regulatory region 514845	1189 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	823 bp upstream
Tssr138061	transcription start site region 138061	881 bp upstream
Tssr138062	transcription start site region 138062	933 bp upstream
Tssr138063	transcription start site region 138063	1133 bp upstream
Tssr138064	transcription start site region 138064	1149 bp upstream
Tssr140832	transcription start site region 140832	657 bp downstream
Tssr140833	transcription start site region 140833	685 bp downstream
Tssr140834	transcription start site region 140834	735 bp downstream
Tssr140835	transcription start site region 140835	771 bp downstream