rs32566415 SNP Detail

Summary

• ID
  rs32566415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36393628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAAGACAT TTACTACCCA GCATAATTCA AAGTGGACCA
  GAAGTTCCTA GGTACTTGCA CAGACACTGA AAACCCATTG TTGCTTTTTA AAAAGATAAC
  Y
  GCGTCTCTGT GAAGAGTAGA GGGAACGATT TCTACATAGT AGATCTTTCA CAGAATTCTA
  TATCCTCTAC CATGCTCAGG CTTTTCCGCC CTCTAGTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss48182525	NES11812133	PERLEGEN	MM_PANEL2	f	SNP	C		C	T		C		C	C	C
ss148848897	ENSMUSSNP3365053	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
ss322166712	CHEV_7_37479222	CHEVERUD	SCREENING_POP	f	SNP							C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs32566415					SNP	C	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48182525	NES11812133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36393628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	95 bp proximal
Cpgi18884	CpG island 18884	974 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	1235 bp upstream
Rr645552	regulatory region 645552	1351 bp distal
Rr645553	regulatory region 645553	241 bp distal
Rr645554	regulatory region 645554	within coordinates
Rr645555	regulatory region 645555	1709 bp proximal
Tssr72063	transcription start site region 72063	1867 bp downstream