rs32566419 SNP Detail

Summary

• ID
  rs32566419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36393911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATGCAACA CTTCTCTGGC CTTTCCCAGA ACCTAGCAAC
  CCTTAGCGCT TGCCTGAACG CGGCTCTTTT CCCATCGGGA TCCCCTAACA GCGATATGAA
  Y
  TGCAGAAAGG GTTGCTTGCC GTCGGGATAG TCGACAGAAA ATATTTACAA TAATAAAGTC
  AGGTCAAATG CCAGGCAGAC TTCATTCAGA TGTCAGAGAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48182529	NES11812135	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32566419					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48182529	NES11812135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36393911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	within coordinates
Cpgi18884	CpG island 18884	691 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	952 bp upstream
Rr645552	regulatory region 645552	1634 bp distal
Rr645553	regulatory region 645553	524 bp distal
Rr645554	regulatory region 645554	within coordinates
Rr645555	regulatory region 645555	1426 bp proximal
Tssr72063	transcription start site region 72063	1584 bp downstream