rs32566421 SNP Detail

Summary

• ID
  rs32566421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36393965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGCCGC GACGTCTTAC
  AGCACAGGTT ACTGTCCTGA GCGTGCCTAT GCAACACTTC TCTGGCCTTT CCCAGAACCT
  AGCAACCCTT AGCGCTTGCC TGAACGCGGC TCTTTTCCCA TCGGGATCCC CTAACAGCGA
  TATGAACTGC AGAAAGGGTT GCTTGCCGTC GGGATAGTCG ACAGAAAATA TTTACAATAA
  Y
  AAAGTCAGGT CAAATGCCAG GCAGACTTCA TTCAGATGTC AGAGAAGTAG GACCCCACAC
  ACACCCTTCC CCTGAGGTTC TTAAAGAATC GAAAGGCCTC TGGGAGGGAC AGACTCATGG
  GGACACCTGT GCTTGTGTGT TTACCATCTG AGTAGATCCA GAAGGAGCAG AAACCAAAGA
  AGTACAATAG GAAGAACTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss48182531	NES11812136	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs32566421					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48182531	NES11812136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36393965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	22 bp distal
Cpgi18884	CpG island 18884	637 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	898 bp upstream
Rr645552	regulatory region 645552	1688 bp distal
Rr645553	regulatory region 645553	578 bp distal
Rr645554	regulatory region 645554	within coordinates
Rr645555	regulatory region 645555	1372 bp proximal
Tssr72063	transcription start site region 72063	1530 bp downstream