rs32566563 SNP Detail

Summary

• ID
  rs32566563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48050872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAGCG GCCACAACTT
  GTGTGGGCAG CCTTAGCTGG CACTCATCAA ATGTTAGCAT GTCACTGCCT CCCTTGTACT
  ACACAGGACA TCTTTTTTTT TTTTTTTCAC TAACTCACAG GTTCACCAAT CAACATGTGT
  AAGTCTTGGG GGCACCAATG GCCTCCTCTC CAAATTAATT AACAAGACAT TTCCTTCCTT
  Y
  CCCTATGGCT AGGGAGACCA CTCCAATGGT TTTTGGGTTG TTGTTGTTGC TGCTGCTTGG
  GACTTAAACT AATTTTTTAA ATGACCTGGG CTTATGAGGA AAAGCATCTA TATCCAGATT
  TGATGAACAG AGCAAGGGAG GGAAGATGGA TGTAGCCATC CCCAGGGAGT CCATTTTTAT
  CGCCCCTGGG GCCCCTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45664507	mCV23046159	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss146276413	ENSMUSSNP368707	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32566563					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48050872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14280	CpG island 14280	1778 bp distal
Cpgi14281	CpG island 14281	618 bp proximal
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591932	regulatory region 591932	1525 bp distal
Rr591933	regulatory region 591933	607 bp proximal
Tssr37207	transcription start site region 37207	1809 bp downstream
Tssr37208	transcription start site region 37208	1780 bp downstream
Tssr37209	transcription start site region 37209	906 bp downstream
Tssr37210	transcription start site region 37210	91 bp downstream
Tssr37211	transcription start site region 37211	382 bp upstream
Tssr37212	transcription start site region 37212	405 bp upstream
Tssr37213	transcription start site region 37213	495 bp upstream
Tssr37214	transcription start site region 37214	507 bp upstream
Tssr37215	transcription start site region 37215	558 bp upstream
Tssr37216	transcription start site region 37216	651 bp upstream
Tssr41635	transcription start site region 41635	1809 bp upstream
Tssr41636	transcription start site region 41636	1765 bp upstream