rs32566826 SNP Detail

Summary

• ID
  rs32566826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32697678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGGG AATAACATTT
  CGTAAAGGGG AAACGAATTA TTAAGCTGGA ATGGAAACAT TAAGTTTTTC TATAAAGACG
  ATTAAGGAAA ATATATATAT TTCGCCACTC AATTGAGTAA TAGAAAAACG CAACCAAATA
  AACAGAAGTA CTTACCCTCC CAAGGGAAGA TGAGGTCTTA CTAAGGTAGC TAGTACCGTG
  Y
  CAAATGTTTA TAGAGTGCCA ACTGAGACAA GGCACAGATA CATTAGCATT TACTTTTATT
  GTTAAGGTGA CTCAAGAACT GTCACTGCAG CCTTTGCTAT CAGACGTGGC AACTCAGGGA
  CAGGGGAGCT GGGACCCATC GCTGCAATCT CGGCTCGCAG GGGTCTGTCC AGCCTCCGTA
  GGCTGCACTG CAGAGGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss48181874	NES12108549	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs32566826					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181874	NES12108549	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32697678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	38 bp proximal
Fyttd1	forty-two-three domain containing 1	192 bp upstream
Rr404782	regulatory region 404782	507 bp upstream
Rr514841	regulatory region 514841	1787 bp distal
Rr514842	regulatory region 514842	1169 bp distal
Rr514843	regulatory region 514843	within coordinates
Rr514844	regulatory region 514844	448 bp proximal
Rr514845	regulatory region 514845	833 bp proximal
Rr514846	regulatory region 514846	1780 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	467 bp upstream
Tssr138061	transcription start site region 138061	525 bp upstream
Tssr138062	transcription start site region 138062	577 bp upstream
Tssr138063	transcription start site region 138063	777 bp upstream
Tssr138064	transcription start site region 138064	793 bp upstream
Tssr140832	transcription start site region 140832	301 bp downstream
Tssr140833	transcription start site region 140833	329 bp downstream
Tssr140834	transcription start site region 140834	379 bp downstream
Tssr140835	transcription start site region 140835	415 bp downstream