rs32566830 SNP Detail

Summary

• ID
  rs32566830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32698909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACTAAA GCCAGCAACC
  GCGAGAATAG CTTGTCTGGT GTGAATGCCC AGAAGTGCGC TGGGCACGGG CGATTTCCAA
  CCGGCGCCTC CCCTGGGAAC GCCGGGGGTC CCGGACGCGG TCCCTGAACG GCCGCTCGGA
  GGGGTCGTTA AGCGTGAACC GTATTACTGA GTTTGATTAG GTGTTTACTG AAGCGTGTTC
  Y
  CTAGCACGGT TTCAAAGTTA GCCAGTTGGG GGTGGGGAGG GAGAGATGTA CGCAGATTGA
  TAAAATGTCA GGTAGAACAT GGGGTCCCGT GTACATAAAA AGGATGCCGT GGTTTGCTGA
  TGATTATGTA AGAAAAGCAT GAGGATTGTT TTTTATTTTC GAAAAAAAAA ATAATTCCAA
  TCCAACAGTA TGAGGGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss48181878	NES12108552	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs32566830					SNP	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181878	NES12108552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32698909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	within coordinates
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	424 bp downstream
Rr514843	regulatory region 514843	784 bp distal
Rr514844	regulatory region 514844	399 bp distal
Rr514845	regulatory region 514845	within coordinates
Rr514846	regulatory region 514846	549 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	788 bp upstream
Tssr138060	transcription start site region 138060	708 bp downstream
Tssr138061	transcription start site region 138061	676 bp downstream
Tssr138062	transcription start site region 138062	645 bp downstream
Tssr138063	transcription start site region 138063	444 bp downstream
Tssr138064	transcription start site region 138064	418 bp downstream
Tssr140832	transcription start site region 140832	904 bp upstream
Tssr140833	transcription start site region 140833	865 bp upstream
Tssr140834	transcription start site region 140834	824 bp upstream
Tssr140835	transcription start site region 140835	797 bp upstream