rs32566841 SNP Detail

Summary

• ID
  rs32566841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32687474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTAGTTT CATTTAGTAT
  GCACCATTCA TAGACCTCGG TCAAGAACGC CAAGCTCTAC TAATTCAGTA GGCCACAGGC
  TATATCATAG CAGAAATATT TTCACCCAGA CACTTTTCAG CTCTCCCCTA GGAATATTTT
  AAGGTAAATT ATTTTGCTTC TAGTCGTGGG ACTTCACCTG CTCTGGAGAC CATCATTGTA
  Y
  TAAACCTATT TTAAGTGTCA AGAAAAACTC CCTCACGCCA TATTTCTACT GTGCCTCTGC
  TCCTGCATCC TCTTAAGATG TTGAGACCCT GCTTCTGTTG TTCTTGTGGT GCTGAGGATG
  GAGCCCAGGG CTGCCTGCAT GCTAGGCAAG CACTCTACCC TGAATTACAC TCCCAACCTA
  AGACCAGTTG TTAATGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48181786	NES12109141	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32566841					SNP	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181786	NES12109141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32687474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	782 bp proximal
Rr325218	regulatory region 325218	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140826	transcription start site region 140826	743 bp upstream
Tssr140827	transcription start site region 140827	406 bp downstream
Tssr140828	transcription start site region 140828	1167 bp downstream
Tssr140829	transcription start site region 140829	1182 bp downstream
Tssr140830	transcription start site region 140830	1221 bp downstream