rs32567569 SNP Detail

Summary

• ID
  rs32567569
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32688057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTCTCA GGGCAGCAGC
  ATCTCACTGA CAAAGGACAT GCACATGATT TCTGTCCCTT CAGCGAGCCC ACACCCAGTG
  CAATCAGTTT CTTTTAACCC ACGGGCCTAC CTCTCCTCCT CACCCACATT CATCTCTTCC
  TAACCTTGCT GAGCCATTGT AATCTAAAAC CGTAGCTCCC AGAATATCTT AGCACCCTTT
  W
  AAAATCGGTC TGGGTTATCA CAAGTTTTAA CGCAGGGCAC CAATCTTGTT TCTGCTCTTA
  TCTATAGACT TTGGCCTATA AAAATCTCAC TACAGCACCT CAGTCCTTTC TCCCAGACTC
  TCAATGTCCA CCTCTCCTCT GGCAGTCTTG TATCTTAGTT TCTTCACTGT CTTCCCTGGC
  CCTCAAAGAA TCATACCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48181794	NES12109086	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32567569					SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181794	NES12109086	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32688057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	199 bp proximal
Rr325218	regulatory region 325218	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140826	transcription start site region 140826	1326 bp upstream
Tssr140827	transcription start site region 140827	170 bp upstream
Tssr140828	transcription start site region 140828	584 bp downstream
Tssr140829	transcription start site region 140829	599 bp downstream
Tssr140830	transcription start site region 140830	638 bp downstream