rs32569048 SNP Detail

Summary

• ID
  rs32569048
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32690400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA AATTCTGCCA GACTATTGTT
  M
  AGACCAAGGA AAGCTTGACT CTAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48181814	NES12108985	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	C	A	C	A		C	C	C	C		C
ss147954726	ENSMUSSNP6405027	ENSEMBL	ENSEMBL_Sanger	f	SNP					A
ss325137930	CHEV_16_32870116	CHEVERUD	SCREENING_POP	f	SNP								C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32569048					SNP	C	A	A	C	A	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181814	NES12108985	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32690400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	1619 bp distal
Rr323396	regulatory region 323396	306 bp proximal
Rr325218	regulatory region 325218	999 bp distal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140828	transcription start site region 140828	1750 bp upstream
Tssr140829	transcription start site region 140829	1712 bp upstream
Tssr140830	transcription start site region 140830	1662 bp upstream
Tssr140831	transcription start site region 140831	68 bp upstream