rs32569050 SNP Detail

Summary

• ID
  rs32569050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32690447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC TGAAGGTGGC CCTGTGGTTG
  Y
  TAATTTGCAA GCCCAGGCCT AAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48181816	NES12108987	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T		T	T	T	T		C
ss325137931	CHEV_16_32870163	CHEVERUD	SCREENING_POP	f	SNP						T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32569050					SNP	C	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181816	NES12108987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32690447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	1666 bp distal
Rr323396	regulatory region 323396	259 bp proximal
Rr325218	regulatory region 325218	1046 bp distal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140828	transcription start site region 140828	1797 bp upstream
Tssr140829	transcription start site region 140829	1759 bp upstream
Tssr140830	transcription start site region 140830	1709 bp upstream
Tssr140831	transcription start site region 140831	115 bp upstream