rs32569368 SNP Detail

Summary

• ID
  rs32569368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:36392949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGAATGAT GGCATTCAGG ATTTTTTTCT TCTAGGTGGG
  CACTCAACTA AGAGACACTC CAGCCTTCCT AGGACCAGAA GGGCTGTCAT TTAGCGGCCA
  Y
  CTAGAATACA AACTTGTCTG CCTCCAGGCA TAGCCAAGCC ACTACATCCC ATCATACAAC
  TGTAAACAGT ATACTGGGCA GTGGGGGCAG GGGGCTAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48182513	NES11812127	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C		T	T		C	T	T	C		T
ss148848848	ENSMUSSNP6917585	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss322166702	CHEV_7_37478543	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32569368					SNP	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48182513	NES11812127	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36392949 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18883	CpG island 18883			774 bp proximal
Cpgi18884	CpG island 18884			1653 bp proximal
Gm36722	predicted gene, 36722			Intron
				mRNA-UTR
Gm38285	predicted gene, 38285			1914 bp upstream
Rr645552	regulatory region 645552			672 bp distal
Rr645553	regulatory region 645553			within coordinates
Rr645554	regulatory region 645554			666 bp proximal