rs32570024 SNP Detail

Summary

• ID
  rs32570024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36393420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACTCTCT CTGGGAGTCT
  TCTGGAGATT CAGCAGGAGG TAGAGGACCT CTGAGTCTTA GATGCAGTCT CAGGGGTGGT
  CAAGATTGCC TCTTTGGCTC TTGGGAACGT TGAAGGGGTC ATAATCTGAC CACCCAGTTT
  CAAGGTGAGT CTCCTGACCG AGATGCCAAC TCTCAGTTTC CCCCATGGGC TGGCACTGAG
  Y
  GTTTGGATGT TTCTCTTTAT TCATCTCCTT CCTTCCTCTG TCTATTTTTA GGGGTTTAAG
  AAATTATTCT CAGAAACGCG GCACCTCCCA AAGGTAGACG TATTTAACTT AAGACATTTA
  CTACCCAGCA TAATTCAAAG TGGACCAGAA GTTCCTAGGT ACTTGCACAG ACACTGAAAA
  CCCATTGTTG CTTTTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48182519	NES11812130	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32570024					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48182519	NES11812130	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36393420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	303 bp proximal
Cpgi18884	CpG island 18884	1182 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	1443 bp upstream
Rr645552	regulatory region 645552	1143 bp distal
Rr645553	regulatory region 645553	33 bp distal
Rr645554	regulatory region 645554	195 bp proximal
Rr645555	regulatory region 645555	1917 bp proximal