rs32572529 SNP Detail

Summary

• ID
  rs32572529
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107112450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCA CACCAATTTT GATAGTAAAA
  S
  TAGAAAATAT AAAAACACCA CAATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45665307	mCV22328621	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss147176143	ENSMUSSNP1891960	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32572529					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107112450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14538	CpG island 14538	1039 bp distal
Ift25	intraflagellar transport 25	within coordinates
Lrrc42	leucine rich repeat containing 42	1721 bp upstream
Rr398372	regulatory region 398372	1509 bp downstream
Tssr38232	transcription start site region 38232	1973 bp downstream
Tssr38233	transcription start site region 38233	1351 bp downstream
Tssr38234	transcription start site region 38234	1335 bp downstream
Tssr38235	transcription start site region 38235	1314 bp downstream
Tssr38236	transcription start site region 38236	1865 bp upstream
Tssr42677	transcription start site region 42677	1897 bp upstream
Tssr42678	transcription start site region 42678	1876 bp upstream
Tssr42679	transcription start site region 42679	1847 bp upstream
Tssr42680	transcription start site region 42680	1762 bp upstream
Tssr42681	transcription start site region 42681	1729 bp upstream