rs32573169 SNP Detail

Summary

• ID
  rs32573169
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119359122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCGGAG CGGAGCGGAG
  CAGAGCAGAG CAAAGCAAAG CAAAGCAAAG CAAAGCAATG CAGAGCGGAG CGGAGCGGAG
  CAGAGCAGAG CAAAGCAAAG CAATGCAGAG CGGAGCGGAG CGGAGCGGAG CGGAGCAGAG
  CAAAGCAAAG CAAAGCAAAG CAAAGCAATG CAGAGCAGAG CGGAGTGGAG CAGAGCAAAG
  M
  AAAACAGCAT AAAGATCTGA AAGGATGAAA TAAAACTCAC TCTTCACACA CAGTGTGACT
  ATTTACATAG TAAATTTCCA GAAATCAAAT TTGTAAAAGA TCAATTTTTA AAAGGGGACC
  AATTCATTTT TTGTTTGCTT GCTTGCTTGC TTGTGTGACA GGCTCTTATC TATGAAAGCC
  ATTGCTGTCC TAGAACTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47183585	NES11583906	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32573169					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47183585	NES11583906	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119359122 () rs orientation: forward

Symbol	Name	Function Class
Acsm3	acyl-CoA synthetase medium-chain family member 3	984 bp upstream
Gm74181	predicted gene, 74181	1196 bp downstream
Rr654652	regulatory region 654652	602 bp proximal
Rr654653	regulatory region 654653	1036 bp proximal
Tssr68754	transcription start site region 68754	1019 bp upstream
Tssr68755	transcription start site region 68755	1044 bp upstream
Tssr68756	transcription start site region 68756	1082 bp upstream
Tssr74499	transcription start site region 74499	896 bp downstream