rs32573836 SNP Detail

Summary

• ID
  rs32573836
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116679843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCAGAGCT AAGCAGCCCT GGGTTAGAAA TATCTCTGGG
  CTGGGCGTGG TGGGTCATGC CTTTAACCCC AGCACTCAGG AGGCAGAGGC AGGCAGATTT
  S
  TGAGTTCCAG GACAGCCTGG TCTACAAAGT GAGTTCCAGG ACAGCCAAGG CTACACAGAG
  AAACCCTGTC TTGGAAACAA ACAAACAAAC AAATAAACA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45665620	mCV22661458	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32573836					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116679843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	991 bp distal
Cpgi14643	CpG island 14643	1891 bp proximal
Gm12996	predicted gene 12996	1194 bp upstream
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	1138 bp upstream
Rr597993	regulatory region 597993	783 bp distal
Rr597994	regulatory region 597994	1595 bp proximal
Tssr42929	transcription start site region 42929	1759 bp upstream
Tssr42930	transcription start site region 42930	1740 bp upstream
Tssr42931	transcription start site region 42931	1159 bp upstream
Tssr42932	transcription start site region 42932	1147 bp upstream
Tssr42933	transcription start site region 42933	1125 bp upstream