rs32575426 SNP Detail

Summary

• ID
  rs32575426
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:119393833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGAGGA AGGAGGCCCC
  GAACTCCTCG GCCTCGGCTA CAGAGCGGGA TGGACCTCCT TCGCATATTC AGGACCGCGA
  GCCACAAGCC AAGGTGAGCA GAGGAGAGAG CCCAGCAGGC TGGCCCGAAG TCACTTGTGG
  CTGGGAGTCA CTTTCGCCAG CACCCGAAGG GTCCCTGCCG AAGGGTAAGG GCTCACCCAC
  K
  GACCTCACTC AACTCTGCTC CCTTGGTTGT ACCACCTCGT CCAGGCTCTC TCCATAGTTT
  AAAACTGACT TAGTGTCTGG TACACAGAAT ATTCATTTAA CAAACATTTA TTAAGATCCG
  TATAACAAAA TATTTCAGGA ATATCCATGC ACACCTAAAC AGGATTCTCT TGTTTTTATA
  CAATATTTAT GAAGAAGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47184226	NES11599648	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32575426					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184226	NES11599648	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119393833 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19637	CpG island 19637			within coordinates
Eri2	exoribonuclease 2			550 bp upstream
Rexo5	RNA exonuclease 5			Intron
				Noncoding-Transcript-Variant
Rr654660	regulatory region 654660			654 bp distal
Rr654661	regulatory region 654661			590 bp distal
Rr654662	regulatory region 654662			470 bp distal
Rr654663	regulatory region 654663			661 bp proximal
Tssr68757	transcription start site region 68757			858 bp downstream
Tssr68758	transcription start site region 68758			598 bp downstream
Tssr68759	transcription start site region 68759			565 bp downstream
Tssr68760	transcription start site region 68760			453 bp downstream
Tssr68761	transcription start site region 68761			316 bp downstream
Tssr74500	transcription start site region 74500			654 bp upstream
Tssr74501	transcription start site region 74501			618 bp upstream