rs32575429 SNP Detail

Summary

• ID
  rs32575429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119393854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCTCGG CCTCGGCTAC
  AGAGCGGGAT GGACCTCCTT CGCATATTCA GGACCGCGAG CCACAAGCCA AGGTGAGCAG
  AGGAGAGAGC CCAGCAGGCT GGCCCGAAGT CACTTGTGGC TGGGAGTCAC TTTCGCCAGC
  ACCCGAAGGG TCCCTGCCGA AGGGTAAGGG CTCACCCACT GACCTCACTC AACTCTGCTC
  Y
  CTTGGTTGTA CCACCTCGTC CAGGCTCTCT CCATAGTTTA AAACTGACTT AGTGTCTGGT
  ACACAGAATA TTCATTTAAC AAACATTTAT TAAGATCCGT ATAACAAAAT ATTTCAGGAA
  TATCCATGCA CACCTAAACA GGATTCTCTT GTTTTTATAC AATATTTATG AAGAAGTAAA
  AATGAATGGT CATTTTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47184229	NES11599650	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32575429					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184229	NES11599650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119393854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	21 bp distal
Eri2	exoribonuclease 2	571 bp upstream
Rexo5	RNA exonuclease 5	within coordinates
Rr654660	regulatory region 654660	675 bp distal
Rr654661	regulatory region 654661	611 bp distal
Rr654662	regulatory region 654662	491 bp distal
Rr654663	regulatory region 654663	640 bp proximal
Tssr68757	transcription start site region 68757	879 bp downstream
Tssr68758	transcription start site region 68758	619 bp downstream
Tssr68759	transcription start site region 68759	586 bp downstream
Tssr68760	transcription start site region 68760	474 bp downstream
Tssr68761	transcription start site region 68761	337 bp downstream
Tssr74500	transcription start site region 74500	675 bp upstream
Tssr74501	transcription start site region 74501	639 bp upstream