rs32576164 SNP Detail

Summary

• ID
  rs32576164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119394305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCATTTTCT CATGTTAAAG TTGTGGTTAT ATAACTGACT
  GATAGGGAAA AATATAGATT AGGGTGGGGA TGGTTAGAAA GCAGATGGAT GTTTGTAAAG
  Y
  CCCCTGGGTT GGAAACGGTA GTCCAGAGAT TAAAAAGCTT GATCTTCGGA GGCTGCATTC
  CCGCTGTGGC TTTTAAACCT CTTTCTTCAT TTCTTTGTTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47184235	NES11599654	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32576164					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184235	NES11599654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119394305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	472 bp distal
Eri2	exoribonuclease 2	1022 bp upstream
Rexo5	RNA exonuclease 5	within coordinates
Rr654660	regulatory region 654660	1126 bp distal
Rr654661	regulatory region 654661	1062 bp distal
Rr654662	regulatory region 654662	942 bp distal
Rr654663	regulatory region 654663	189 bp proximal
Tssr68757	transcription start site region 68757	1330 bp downstream
Tssr68758	transcription start site region 68758	1070 bp downstream
Tssr68759	transcription start site region 68759	1037 bp downstream
Tssr68760	transcription start site region 68760	925 bp downstream
Tssr68761	transcription start site region 68761	788 bp downstream
Tssr74500	transcription start site region 74500	1126 bp upstream
Tssr74501	transcription start site region 74501	1090 bp upstream