rs32576969 SNP Detail

Summary

• ID
  rs32576969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGAGTTGTAG TTCTCAGTAT CCAGAAAGCG AGAGCTTCAG GCGGTGTTGG GAGTCCGTGG
  GCGGGGCCCA AAGTTCCATC CCGGCCAGGG AGTCTCCCAA GGGAGGGAAA AGAAGCCTTT
  TCCCGCTCTG GCCTGGGCTG TCAAATGAGG GGTGATCTCA GCTGAGGTCA GCCCGAGCTT
  CCACACTCAA TCTAACCTCG CGGATAATAT ATGACTCAAA GATGGTCGTA GGGCCATGAG
  AAAAAAAAAA ACACAGACGC TTCCTTTGCT GAGTCGTGCT GTGGTTTCCG AGAAAAAAGT
  R
  TGTGTGGGGG TATTCTCACT GGTCTTGAAG GTCGCGGTCC TGTCTCTTCC CTTTTGTTCT
  TTTCCCTCCC CTGCTCTTGG CTGCTAAGTG GCCTTTGTAC GCCAGAGTGA AACTCCAAGT
  CCCGTCAGGC CGCGAGGTGC GCGCACGCGT GATGGAGCTA CCCGGCCACG CCGCAGGAGG
  AGGGCTGATG GTTTGGCTTC TGATTGGTCA GATATTTTAC GATTTCTTTT CGCTGATTGG
  CTGGGATTGC TGCCGGAAAG GTCCCAGCCC GGAGATGGCA GAGCAGAGGC GTTCTATGGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45665167	mCV25110903	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32576969					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			2 bp proximal
Rr398613	regulatory region 398613			272 bp downstream
Rr602340	regulatory region 602340			1242 bp distal
Rr602341	regulatory region 602341			within coordinates
Rr602342	regulatory region 602342			260 bp proximal
Tssr39694	transcription start site region 39694			1166 bp downstream
Tssr39695	transcription start site region 39695			1132 bp downstream
Tssr39696	transcription start site region 39696			1101 bp downstream
Tssr39697	transcription start site region 39697			243 bp upstream
Tssr39698	transcription start site region 39698			297 bp upstream
Tssr39699	transcription start site region 39699			360 bp upstream
Zfp46	zinc finger protein 46			Intron
				Noncoding-Transcript-Variant