rs32578813 SNP Detail

Summary

• ID
  rs32578813
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119391265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACTGCTT TCATAATAGC
  ATCATTAAAA AATCAATTCC CTTAAAAGCT TATTCCAATA CCCAAAGCAG TGAGAAGCAA
  AGTTATAATA AAGCTGTGCC ATGGAATAAG TCAGAATATC AAAAGTATGC CCATTTTGTT
  TTACAATTAA ACATGAACAC AGCATGAATT AAAATATACT TTACTATTGA AAAGCCTTTT
  W
  TTTTCCAGTT GTATCTAATC AAAGTTTTAA ATGTAATCTT AAAACAACTA GCTACTTTGG
  ATAATCACAT TCAGGTATTT GGTATTTTAT TCTTTTGTAG GTCAGAGTTT TTATATTAAA
  CTACGAGCTT ACAGCATTGT TTTCTTATTG GCTGGCTTAT ATCTAGGATG TTTAAGAAGA
  CTCCTAGAGC ACTAGCTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47184178	NES11599707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32578813					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184178	NES11599707	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119391265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	1625 bp proximal
Eri2	exoribonuclease 2	within coordinates
Rexo5	RNA exonuclease 5	1964 bp upstream
Rr654660	regulatory region 654660	1355 bp proximal
Rr654661	regulatory region 654661	1915 bp proximal
Tssr68757	transcription start site region 68757	1699 bp upstream
Tssr68758	transcription start site region 68758	1945 bp upstream
Tssr68759	transcription start site region 68759	1979 bp upstream
Tssr74500	transcription start site region 74500	1903 bp downstream
Tssr74501	transcription start site region 74501	1916 bp downstream