rs32580161 SNP Detail

Summary

• ID
  rs32580161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:119392043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGAGGG CCCCACACCT
  GGAGGCTCAG CAGTCAGCAG GCCACGGCCA AACTGAACTG AGGGACAGCT TACAGCACAC
  AGCAGGACCC TGCCTCAAAC AACAGCTGCA TACTGACTGA AGGAAAGGAG GGCTAGACTT
  TAAAAGTCCT AGGTCCTTGT GCGAATGGCC ATCCTCTCTT GAGTTTAGTG TCCATTTTAC
  Y
  TGAGCGGGCT TCACAAACAC TACTCTTACC TGTTCACGTT TTATAGTAGT ACCGAGGAAT
  TGACTATAAA GATGTATTTT TCAAGCCTTT GCTATGTACC AAGGGGATGA TGCCTGTGCT
  TAAACTCTAA AAATGGAGGG GAGAAAGATT ACCAGAGTAC TACTGAAAGG TAATCTATGA
  TTAAAAACAA AAACAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47184196	NES11599720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32580161					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184196	NES11599720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119392043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19637	CpG island 19637			847 bp proximal
Eri2	exoribonuclease 2			Intron
				Noncoding-Transcript-Variant
Rexo5	RNA exonuclease 5			1186 bp upstream
Rr654660	regulatory region 654660			577 bp proximal
Rr654661	regulatory region 654661			1137 bp proximal
Rr654662	regulatory region 654662			1228 bp proximal
Tssr68757	transcription start site region 68757			921 bp upstream
Tssr68758	transcription start site region 68758			1167 bp upstream
Tssr68759	transcription start site region 68759			1201 bp upstream
Tssr68760	transcription start site region 68760			1282 bp upstream
Tssr68761	transcription start site region 68761			1448 bp upstream
Tssr74500	transcription start site region 74500			1125 bp downstream
Tssr74501	transcription start site region 74501			1138 bp downstream