rs32580407 SNP Detail

Summary

• ID
  rs32580407
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:33040208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTAGAA AACCCGCTTT
  CCTCTTCCCT CCACGTGTAC CATGCACATG CACATACATT TAAGCACATA CACAGGCACA
  TTCATTCTAT GACTTCTTAT TGCCCCTGAG GCTGACATCA AGACAAAAAG AGAAGCAAGC
  CTTGATCTGG TAGAATGGTG GTTTTTTTAC CTTGTGCCCC TGGGCCATCT TCACATGGCT
  S
  GAGCTCCTAG ACACTCACTC TTGGCCATCG TCACTGTTAG CCATCTGTGT TTGTAGGGAT
  TTCATATTTG AGCATGGGTT TTGAAATTTG GTAGTGCGTT TTTAGTTTAA GCTTTAAAAA
  AATAATAATG GGGCTGGTGA GATGGCTCAA TGGGTAGGAG CACCCGACTG CTCTTCCAAA
  GGTCCAGAGT TCAAATCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48183972	NES12102574	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32580407					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48183972	NES12102574	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:33040208 () rs orientation: forward

Symbol	Name	Function Class
Osbpl11	oxysterol binding protein-like 11	within coordinates
Rr317797	regulatory region 317797	593 bp proximal
Rr317798	regulatory region 317798	1793 bp proximal
Rr326583	regulatory region 326583	1209 bp distal