rs32580906 SNP Detail

Summary

• ID
  rs32580906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119392339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACAAAAC AAACAAACCT CCCAACAGCA ATACACTGCA
  GTCCAAAGAA GGGAAGATCC CAAATGATGA CGAATACAAC TTTAAGTAGA CAGACACCTG
  R
  AATAGTTATT TTGGCTATTT GAAAAAGACA AGACGTGAGG CCAATGTAGG GATTTGGAAT
  GAAAAACTAA CATTTACTAG TCACTTCTTC AGCAAATATT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47184202	NES11599723	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32580906					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184202	NES11599723	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119392339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	551 bp proximal
Eri2	exoribonuclease 2	within coordinates
Rexo5	RNA exonuclease 5	890 bp upstream
Rr654660	regulatory region 654660	281 bp proximal
Rr654661	regulatory region 654661	841 bp proximal
Rr654662	regulatory region 654662	932 bp proximal
Tssr68757	transcription start site region 68757	625 bp upstream
Tssr68758	transcription start site region 68758	871 bp upstream
Tssr68759	transcription start site region 68759	905 bp upstream
Tssr68760	transcription start site region 68760	986 bp upstream
Tssr68761	transcription start site region 68761	1152 bp upstream
Tssr74500	transcription start site region 74500	829 bp downstream
Tssr74501	transcription start site region 74501	842 bp downstream