rs32589000 SNP Detail

Summary

• ID
  rs32589000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43943485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT CTGGGTTCAG TACCACTGGC
  Y
  CTCGATTCTT CTGCTGTTGC TGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47685862	NES11331179	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		C	T	T	C		C
ss322940028	CHEV_9_43840271	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32589000					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47685862	NES11331179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43943485 () rs orientation: forward

Symbol	Name	Function Class
Gm39323	predicted gene, 39323	within coordinates
Tssr84579	transcription start site region 84579	7 bp downstream
Tssr84580	transcription start site region 84580	within coordinates
Tssr84581	transcription start site region 84581	56 bp upstream
Tssr89098	transcription start site region 89098	1802 bp downstream
Tssr89099	transcription start site region 89099	1868 bp downstream