rs32589530 SNP Detail

Summary

• ID
  rs32589530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34576125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACGCTATT AAACTTTGAA GAAACCAAGC TGTCTTTCCA
  TCTCCCAACT ACTGCTACGT AGGACCCAGG TGGCATAATA AGGATTCATT CTGAGAAGCA
  R
  AACCAGCAGG AGATATGAAT TACGAGGGTT TTGTTAGGAA TTAGTTAGGG ATCTGCTGTG
  CAAGTTCGAA ACCCGTAGAT CAAGCTGGGA CTTTTTCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46164265	mCV24921843	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss149092967	ENSMUSSNP354352	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss322575055	CHEV_8_35172025	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32589530					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34576125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	116 bp distal
Dctn6	dynactin 6	259 bp upstream
Rr400814	regulatory region 400814	324 bp downstream
Rr661953	regulatory region 661953	1130 bp distal
Rr661954	regulatory region 661954	629 bp distal
Rr661955	regulatory region 661955	1099 bp distal
Rr661956	regulatory region 661956	within coordinates
Rr661957	regulatory region 661957	1341 bp proximal
Tssr80889	transcription start site region 80889	1182 bp upstream
Tssr80890	transcription start site region 80890	1129 bp upstream
Tssr80891	transcription start site region 80891	483 bp upstream
Tssr80892	transcription start site region 80892	449 bp upstream
Tssr80893	transcription start site region 80893	162 bp upstream