rs32590352 SNP Detail

Summary

• ID
  rs32590352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131564652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTccaga ctggccttga actcataatc
  ctcctcctcc tgtcttccaa agactggaac agttgtTTCC AACTGTGATG ACAAGAGGAG
  GCACTTGCCT TTGTTACCTT GGCCTGTTCC AGGTAAGAGG GTTCTAGGCA CACAGGCATG
  Y
  TAACAGGCCA TAGAGTCCTT TCTCCTTCAG TGAGCATCTG AAATCACTGG TAAGAAATGG
  GCCTCATCAT GTCACCCAGG ATAAaaaatt aaaataaaat aaaataaaat aaaataaaat
  aaaGGTGGGG AGGGGGCAGA ACCTGAGTAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45167028	mCV25112561	ABI	CRAMUS_MOUSE	f	SNP		C				C	T
ss51367000	NES14473903	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C		T	C		C	C	C		T
ss145480040	ENSMUSSNP3438739	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss319974760	CHEV_1_133533491	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32590352					SNP	T	C	T	T	C	C	T	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51367000	NES14473903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131564652 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	1400 bp upstream
Rr12195	regulatory region 12195	549 bp proximal
Rr28482	regulatory region 28482	948 bp proximal
Rr366988	regulatory region 366988	1300 bp upstream
Tssr8635	transcription start site region 8635	1356 bp upstream
Tssr8636	transcription start site region 8636	1392 bp upstream
Tssr8637	transcription start site region 8637	1440 bp upstream
Tssr8638	transcription start site region 8638	1474 bp upstream
Tssr8639	transcription start site region 8639	1526 bp upstream
Tssr8640	transcription start site region 8640	1571 bp upstream