rs32591304 SNP Detail

Summary

• ID
  rs32591304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11259841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGAGAC CTGTGGGAAT
  GACAGGCAGA GGATCGGCTT CACTGTCAGC AGCCACTGTA CCATCACCAA ACACACCATC
  ACAGAGCCTC ATCAAATGCA CAGGTGATGT GTGCTACATC CTTCTTGTTT AACTAAGCCA
  AAAATCCTGC CCTCCCAACT CCATTCTGGA AACCAACAGC TGCCACCTGC CCTTCCTCTC
  Y
  TGAAGATGCC CGTGGGCACA GCAAACGCCA CCCAGAGTCA TTGTGAGCAG TGGAAGGCAG
  ATTTTCTTCT GTTCCAACTC TAAGTGGCTG GTGTCGGTCT GATGTCAAAG CCTGTGCAAC
  ATGCTGGATC CCCAACACGA AGGTTCCTCT CGCCCCCCTC TCTTCTCCCC TGGACTTGCC
  GAGTCACACA CCAGACAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46163783	mCV23752769	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss51941320	NES14960084	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	C	T	C	T	T	C
ss148666854	ENSMUSSNP1933848	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32591304					SNP	T	T	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51941320	NES14960084	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11259841 () rs orientation: forward

Symbol	Name	Function Class
Col4a1	collagen, type IV, alpha 1	within coordinates
Tssr80369	transcription start site region 80369	1732 bp downstream