rs32591671 SNP Detail

Summary

• ID
  rs32591671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAGGACAC TAACCCTAGA ATTTCTACAG ACCATCAAAT
  GATAATGCAT ACCACAAAGT TCTTAGAGCA AAGTTTATTC CTGGGGCGTC ACTGTTCTGA
  Y
  ACCAGTATTC TCGATTCTGA GCCGAAAGTT GCCCAGAAAC ACCCTGTCTC TCTAGATCTT
  TGTCCTGTGA TAACTGAATG CTTGCTTCCG GGGCGATCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46164955	mCV24922129	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss60592244	NES16320137	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	C	C		C	C	C	C		C
ss149092933	ENSMUSSNP5523977	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss322575048	CHEV_8_35170808	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32591671					SNP	T	T	T	T	T	C	T	C	C	T	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592244	NES16320137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	361 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	592 bp upstream
Rr661952	regulatory region 661952	830 bp distal
Rr661953	regulatory region 661953	within coordinates
Rr661954	regulatory region 661954	88 bp proximal
Rr661955	regulatory region 661955	97 bp proximal
Rr661956	regulatory region 661956	772 bp proximal
Tssr80889	transcription start site region 80889	8 bp downstream
Tssr80890	transcription start site region 80890	62 bp downstream
Tssr80891	transcription start site region 80891	689 bp downstream
Tssr80892	transcription start site region 80892	757 bp downstream
Tssr80893	transcription start site region 80893	1038 bp downstream