rs32593489 SNP Detail

Summary

• ID
  rs32593489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176541946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG GGCCTTTGAG TACATTCAAA
  W
  TCTAAAATAT AATACTTCTA ACTAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46702094	NES10690810	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T	A	T		A	T	A		T
ss146340006	ENSMUSSNP5837978	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				T
ss320157479	CHEV_1_178644511	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32593489					SNP	T	T	A	T	T	T	T	A	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702094	NES10690810	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176541946 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	1514 bp downstream
Rr423899	regulatory region 423899	1497 bp distal
Rr423900	regulatory region 423900	1783 bp distal