rs32594964 SNP Detail

Summary

• ID
  rs32594964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:44054657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAACGA GTCTTAAAGC
  TCCGCTGCTC TGCAGGAGTA TTTACCTCTG TCTACTCTAC AGGACAGAGG TTAAATACTA
  CTAATAGAAA TCTTTTATAT TAATGACATT TTAAAAATAG TCCATGAGAA TCTCACCTAA
  GTTTGTGTTT TGTTTTTTTA ACACTGATAT ACAAATTGGG ACTCTATTCT GGGGAAAATA
  Y
  CAAGTTCTCT CTTGTCCCAC CCAAATCAAG AATTTAAAAA TCTTGAATGA GGCAGATCTT
  AAAAAGAACT GTTTCCACCT CCCTCCCCCT TTGTTAGCCA CAGGCAGGGG AGAACCAGAG
  AGAAGGGGGA GGGGGTACAA AAGCTTGTGG TTGAAACCTA TGACAGTATG ACCGGCAGGC
  CTCAGGGTTC CACGGCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46304247	mCV25148511	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	C
ss47686424	NES11345112	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32594964					SNP	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686424	NES11345112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44054657 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbl	Casitas B-lineage lymphoma			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Mcam	melanoma cell adhesion molecule			633 bp downstream
Rr677565	regulatory region 677565			761 bp proximal
Rr677566	regulatory region 677566			1088 bp proximal
Rr677567	regulatory region 677567			1181 bp proximal
Tssr89112	transcription start site region 89112			1167 bp downstream
Tssr89113	transcription start site region 89113			1353 bp downstream