rs32594966 SNP Detail

Summary

• ID
  rs32594966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44055911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGAGAGAG AGAGAGAGAG
  AGAGAGAAGG GCCCCCGAAT TCACTTGCCA CTTAAATACA TCCAAAACAT GGCCACCCTC
  TCCACTACTG GGTAAGAGGT AGCGGGAAGA GCAACACAGG CTCCACAACC CCCACTGGAG
  GGCGTATGTG GTGAGGCAGT GTGAGTCTGA TGAGCTGTGC ACAGCATGCA CTGAGCAATC
  Y
  TCTTCACTGG CCTCCATTCT GGGTCAGAGG AAAGGAAACT CAAGGCAATG TGAAGGTTTG
  CCTCTCACAT TTGGTTGTAG CACTGAATCA GGAATAGGTT TGCCTCTCAC ATTTGGTTGT
  AGCACTGAAT CAGGAATGCA GGGCCAGGTG AGCAGAACTC TTGCTGACTT GTTCAGCAGC
  CAGATCAGTG GGAGATCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47686426	NES11345007	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32594966					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686426	NES11345007	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44055911 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Mcam	melanoma cell adhesion molecule	1887 bp downstream
Rr677565	regulatory region 677565	308 bp distal
Rr677566	regulatory region 677566	within coordinates
Rr677567	regulatory region 677567	52 bp distal
Tssr89112	transcription start site region 89112	66 bp upstream
Tssr89113	transcription start site region 89113	99 bp downstream