rs32594968 SNP Detail

Summary

• ID
  rs32594968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:44056110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCACT GGCCTCCATT
  CTGGGTCAGA GGAAAGGAAA CTCAAGGCAA TGTGAAGGTT TGCCTCTCAC ATTTGGTTGT
  AGCACTGAAT CAGGAATAGG TTTGCCTCTC ACATTTGGTT GTAGCACTGA ATCAGGAATG
  CAGGGCCAGG TGAGCAGAAC TCTTGCTGAC TTGTTCAGCA GCCAGATCAG TGGGAGATCT
  R
  AGGCTGGCAC TTAGCCTGGG TTCTGGACAA CACAGGAGTG GTCAGCCACA TTTTTCTCAA
  GCAGGGAAGA GGCTGCAAGA TCTGCAAGCA GGTGTTGGTC AGCCCCTGGC CCCTCCCCAT
  AGTGCTCTTC AGCAGGCACA AAACAATGTG CAGGGCTCTC CCTGTCCTTA GTTCTCCATC
  TCAACTCTTG TGCTACTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47686428	NES11345008	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32594968					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686428	NES11345008	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44056110 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbl	Casitas B-lineage lymphoma			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr677565	regulatory region 677565			507 bp distal
Rr677566	regulatory region 677566			172 bp distal
Rr677567	regulatory region 677567			251 bp distal
Tssr89112	transcription start site region 89112			265 bp upstream
Tssr89113	transcription start site region 89113			80 bp upstream