rs32594970 SNP Detail

Summary

• ID
  rs32594970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44056131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCAGAG GAAAGGAAAC
  TCAAGGCAAT GTGAAGGTTT GCCTCTCACA TTTGGTTGTA GCACTGAATC AGGAATAGGT
  TTGCCTCTCA CATTTGGTTG TAGCACTGAA TCAGGAATGC AGGGCCAGGT GAGCAGAACT
  CTTGCTGACT TGTTCAGCAG CCAGATCAGT GGGAGATCTG AGGCTGGCAC TTAGCCTGGG
  Y
  TCTGGACAAC ACAGGAGTGG TCAGCCACAT TTTTCTCAAG CAGGGAAGAG GCTGCAAGAT
  CTGCAAGCAG GTGTTGGTCA GCCCCTGGCC CCTCCCCATA GTGCTCTTCA GCAGGCACAA
  AACAATGTGC AGGGCTCTCC CTGTCCTTAG TTCTCCATCT CAACTCTTGT GCTACTTACT
  GGAACCAAGA AATACTGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47686430	NES11345009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32594970					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686430	NES11345009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44056131 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Rr677565	regulatory region 677565	528 bp distal
Rr677566	regulatory region 677566	193 bp distal
Rr677567	regulatory region 677567	272 bp distal
Tssr89112	transcription start site region 89112	286 bp upstream
Tssr89113	transcription start site region 89113	101 bp upstream