rs32595060 SNP Detail

Summary

• ID
  rs32595060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44054070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTAGC AAGAGCTTTT
  GAGGTGTGTG TGTGTGTGTG TGTATACATA TATGTGTGTA TATATATATA TATATATATG
  GTTTTGTCTG TAAATTTGCA AATTTTTCCT TTTATATGTG TGTTAGAAAA ATAAAGTGTT
  ATTGTTCCAA AAGCATGATG CTGTGTTCCA TTCATTATGA AGGGACAGAC CTGGGGCTTC
  Y
  AAAACTATAG GTGTTTTCAG AGAGGGACAG GCTCCCAGAA GTCTGCCCTT ACCTCTAGAG
  TATCCATAGC TGGCAGCATG CTACTAAATG CTAGCTAGCG TCTCTGCCCC CTCCTGTGTG
  CCCTATTCAC CTGCATCACT GCGATCGGTC CCAAAGCTAC CCTGTGTAAT TCCCCCTAAC
  CCCAAGTGAA CCAGAACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47686414	NES11345107	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	T	C	C	T	C
ss136391604	ENSMUSSNP1133507	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32595060					SNP	C	T	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686414	NES11345107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44054070 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	203 bp downstream
Mcam	melanoma cell adhesion molecule	46 bp downstream
Rr383290	regulatory region 383290	1420 bp downstream
Rr677565	regulatory region 677565	1348 bp proximal
Rr677566	regulatory region 677566	1675 bp proximal
Rr677567	regulatory region 677567	1768 bp proximal
Tssr89112	transcription start site region 89112	1754 bp downstream
Tssr89113	transcription start site region 89113	1940 bp downstream