rs32595554 SNP Detail

Summary

• ID
  rs32595554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44056407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGCCCC TGGCCCCTCC
  CCATAGTGCT CTTCAGCAGG CACAAAACAA TGTGCAGGGC TCTCCCTGTC CTTAGTTCTC
  CATCTCAACT CTTGTGCTAC TTACTGGAAC CAAGAAATAC TGGTCCTTTC TCTTGCAGCC
  AAGCCAGATT TCCTGGGGCA CTGTGAAGGC ACATGGCACT ACTATCCCTC TGCTGCTTCA
  Y
  TCAGGAGCTG AGACATCAAT TGAAAACCTG ATGACCTGCT CTTGCCCTTC TTCCTATGTG
  CCTCAATGTG TATCTTTGGG TTAGTAGGTT ACTTCTGTAT ATACCAAATG ACTTGACTCT
  TTAGAAGTTA AAAGCAGGGT AGTATGTTTG ATACGCCTTA AAACTCGGGC CAGGCTCTAG
  GATGGGATTC CAATGATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47686434	NES11345011	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		C
ss322940212	CHEV_9_43953193	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32595554					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686434	NES11345011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44056407 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Rr677565	regulatory region 677565	804 bp distal
Rr677566	regulatory region 677566	469 bp distal
Rr677567	regulatory region 677567	548 bp distal
Tssr89112	transcription start site region 89112	562 bp upstream
Tssr89113	transcription start site region 89113	377 bp upstream