rs32595562 SNP Detail

Summary

• ID
  rs32595562
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:44057097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGCACTCTGA GTAACATCAA AGAGACCCGA GGTTGAATGG
  AGGCTAAGAA ATGCCACCCA AGGACAGAAG AGTGGCCTCA AGAGTGAGGA AAGCAATCTT
  S
  GGTGCCAAGA CTCCTAGGGA GAAGAAAAGT AATTAGCAGC AAAGGTGACA GTGACTCTGA
  CTAAGTTAAA AATAGGGGCG AAGAGTAGAA CAGCAACTGT A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47686444	NES11345016	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	C	G	G	G	C	G	G	C	G
ss136391652	ENSMUSSNP71825	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32595562					SNP	G	C	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686444	NES11345016	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44057097 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbl	Casitas B-lineage lymphoma			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr677565	regulatory region 677565			1494 bp distal
Rr677566	regulatory region 677566			1159 bp distal
Rr677567	regulatory region 677567			1238 bp distal
Rr677568	regulatory region 677568			1568 bp proximal
Rr677569	regulatory region 677569			1683 bp proximal
Tssr89112	transcription start site region 89112			1252 bp upstream
Tssr89113	transcription start site region 89113			1067 bp upstream