rs32596428 SNP Detail

Summary

• ID
  rs32596428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:44057577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTAGTTA CCTCATGGTC
  CTGCCTCACG ACTGCTCCGC CGTAAAAGAC TGCACCTTCA AACTATCAGA CTTAAAGGAA
  ACCACAGTGG AAGAGGTAAT GAAACCACTC CATCAGTGAT GTGCACTTGA AGAGAGCACC
  TCCATTCGAA TAGTCCATCA GTGATGTGCA CTTGAAGAGA GCACCTCCAC GCATTCACCA
  R
  GTGGTGCCGC TGCTTTCTCT GCTGCTGGAA ACAAGAGGAG AAAATATTCC CACGAACAGG
  CAAGATGCTC ACAGAGTCCA GTCTGGTCTT CAGCTTGTAA TAGATCCAGT GCTGGCCTAA
  AATTCATAAT TCTCCTATTT CTACTTCTAC AGAGCCGTTA AGACAGGCTT GTTCCATGAT
  TTCTAGGTTG GTGCAGATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47686450	NES11344912	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32596428					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686450	NES11344912	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44057577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbl	Casitas B-lineage lymphoma			Intron
				mRNA-UTR
Rr677565	regulatory region 677565			1974 bp distal
Rr677566	regulatory region 677566			1639 bp distal
Rr677567	regulatory region 677567			1718 bp distal
Rr677568	regulatory region 677568			1088 bp proximal
Rr677569	regulatory region 677569			1203 bp proximal
Tssr89112	transcription start site region 89112			1732 bp upstream
Tssr89113	transcription start site region 89113			1547 bp upstream
Tssr89114	transcription start site region 89114			1963 bp downstream