rs32597054 SNP Detail

Summary

• ID
  rs32597054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44057961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTTGGTG CAGATAGCTT
  CAGGAGACAC AGGCCCAGCA CAGTTGTCCT CAGGATGTCC AGGCTGGCCC ATGGAATTAA
  TATACAGGGT TAACTTTTTT CCTATTTTTT TTCCAGGAAT TCTTGAGTTT TTCTAAAGAA
  CTGCATTCAT CATAAGATCA CATGAACTCA AGGACTAGGG AACATATTTT GTCATGTATA
  Y
  AAATACTCTG TCAAGTAGGA GGAGGGACAA AGTCTAAAGT TGTCCAGCCC ACTAACATAC
  AAGAACCAAG TCTTCCATGC ATTCCTATAG GATTGACTGT GTCTGTGGAC TGAAATCAAA
  GTTGCATCAA GACGCTCTGT GTAGTGCTAG AGTACTTCCG CTACATGTTG ACACTTCAAG
  TGTCAGAGGA GAACATTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47686456	NES11344921	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	C	T	T	C	T
ss136391655	ENSMUSSNP4068413	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32597054					SNP	T	C	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686456	NES11344921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44057961 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Rr677568	regulatory region 677568	704 bp proximal
Rr677569	regulatory region 677569	819 bp proximal
Tssr89113	transcription start site region 89113	1931 bp upstream
Tssr89114	transcription start site region 89114	1579 bp downstream